Selection forces on Reb1 cis-elements

The regulatory network controlling the lysine biosynthetic pathway.

The yeast transcriptional network

Interaction between yeast modules

Amos Tanay PhD page Currently I'm at the Center for Physics and Biology, Rockefeller University (atanay 'AT' mail.rockefeller 'DOT'edu) Ph.D. student of Computer Science at Tel-Aviv University. Supervisor: Prof. Ron Shamir Publications: Amos Tanay, Aviv Regev and Ron Shamir Conservation and Evolvability in regulatory networks: The evolution of ribosomal regulation in yeast PNAS in press webpage Amos Tanay, Israel Steinfeld, Martin Kupiec and Ron Shamir Integrative analysis of genome-wide experiments in the context of a large high-throughput data compendium Molecular Systems Biology, doi: 10.1038/msb4100005 (2005) webpage Aimee Dudley, Daniel Jense, Amos Tanay, Ron Shamir and George Church A global view of pleiotropy and phenotypically derived gene function in yeast Molecular Systems Biology, doi: 10.1038/msb4100004 webpage Irit Gat Viks, Amos Tanay, Daniela Raijman and Ron Shamir The factor graph network model for biological systems To appear in RECOMB 2005 Amos Tanay, Irit Gat-Viks and Ron Shamir A Global View of the Selection Forces in the Evolution of Yeast Cis-Regulation Genome Research 14: 829-834 (2004) webpage Amos Tanay, Roded Sharan, Martin Kupiec and Ron Shamir . Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data Proc. National Academy of Science USA 101 (9), 2981-2986 (2004). our current yeast version of the SAMBA website Irit Gat-Viks, Amos Tanay and Ron Shamir Modeling and Analysis of Heterogeneous Regulation in Biological Network To appear in Journal of Computational Biology webpage Amos Tanay, Roded Sharan and Ron Shamir Biclustering Algorithms: A Survey To appear in the Handbook of Bioinformatics, 2004 . Amos Tanay and Ron Shamir. Modeling transcription programs: inferring binding site activity and dose-response model optimization Proceedings of RECOMB 2003, pp. 301--310. Amos Tanay and Ron Shamir. Multi-level Modeling and Inference of Transcription Regulation (Journal version of the RECOMB 2003 regulation paper) Jounral of Computational Biology 2004;11(2-3):357-75. Amos Tanay, Roded Sharan and Ron Shamir. Discovering Statistically Signifnicant Biclusters in Gene Expression Data Proceedings of ISMB 2002 (Bioinformatics vol 18 Supp 1, S136-44 (2002)). Dana Pe'er, Amos Tanay and Aviv Regev. Minreg: inferring an active regulator set Proceedings of ISMB 2002 (Bioinformatics vol 18 Supp , S258-671 (2002)) Amos Tanay and Ron Shamir. Computational Expansion of Genetic Networks Proceedings of ISMB 2001 (Bioinformatics vol 17 Supplement 1 S270-S278 (2001)) . Teaching. TA in the course "Computational Genomics", Fall 2002/3. TA in the course "Computational Genomics", Fall 2004/5. TA in the course "Analysis of gene expression and DNA chips", Fall 2004/5. Optimization methods for compuitational biology workshop, Fall 2003/4. Optimization methods for compuitational biology workshop, Fall 2004/5. Office address: Deptartment of Computer Science, Tel-Aviv University, Tel-Aviv 69978, Israel. Phone: +972-3-640-5394. Fax : +972-3-640-9357.

Yeast response to hyper-osmotic shock Evolution of the regulation of RNA processing genes in sac fungi